diff --git a/docs/available_software/detail/FastQC.md b/docs/available_software/detail/FastQC.md
index 6b9ad5ec3e..4353d4809d 100644
--- a/docs/available_software/detail/FastQC.md
+++ b/docs/available_software/detail/FastQC.md
@@ -50,4 +50,5 @@ pipeline.
 |FastQC version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
 | --- | --- | --- | --- | --- |
 |0.12.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`FastQC/0.12.1-Java-11`|
-|0.12.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`FastQC/0.12.1-Java-11`|
\ No newline at end of file
+|0.12.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`FastQC/0.12.1-Java-11`|
+|0.12.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`FastQC/0.12.1-GCCcore-14.3.0-Java-21`|
\ No newline at end of file
diff --git a/docs/available_software/detail/GATK.md b/docs/available_software/detail/GATK.md
index 277b9eb6a7..af374db702 100644
--- a/docs/available_software/detail/GATK.md
+++ b/docs/available_software/detail/GATK.md
@@ -47,4 +47,5 @@ The Genome Analysis Toolkit or GATK is a software package developed at the Broad
 |GATK version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
 | --- | --- | --- | --- | --- |
 |4.6.2.0|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`, `aws/graviton4`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`, `graniterapids`<br/>|*(none)*|<span class="software-eessi-version-202606">2026.06</span>|`GATK/4.6.2.0-GCCcore-15.2.0-Java-25`|
+|4.6.2.0|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`GATK/4.6.2.0-GCCcore-14.3.0-Java-17`|
 |4.5.0.0|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`GATK/4.5.0.0-GCCcore-12.3.0-Java-17`|
\ No newline at end of file
diff --git a/docs/available_software/detail/R-bundle-CRAN.md b/docs/available_software/detail/R-bundle-CRAN.md
index b9c488a49f..e7d272d9c3 100644
--- a/docs/available_software/detail/R-bundle-CRAN.md
+++ b/docs/available_software/detail/R-bundle-CRAN.md
@@ -2479,7 +2479,7 @@ Overview of extensions included in R-bundle-CRAN installations
 
 |`fastGHQuad` version|R-bundle-CRAN modules that include it|
 | --- | --- |
-|1.0.1|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
+|1.0.1|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
 
 ### fastICA
 
@@ -2495,7 +2495,7 @@ Overview of extensions included in R-bundle-CRAN installations
 
 |`fastlogranktest` version|R-bundle-CRAN modules that include it|
 | --- | --- |
-|0.2.1|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`|
+|0.2.1|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`|
 
 ### fastmatch
 
@@ -2816,7 +2816,7 @@ Overview of extensions included in R-bundle-CRAN installations
 
 |`frbs` version|R-bundle-CRAN modules that include it|
 | --- | --- |
-|3.2-0|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
+|3.2-0|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
 
 ### fru
 
@@ -2992,7 +2992,7 @@ Overview of extensions included in R-bundle-CRAN installations
 |`gcmr` version|R-bundle-CRAN modules that include it|
 | --- | --- |
 |1.0.4|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`|
-|1.0.3|`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
+|1.0.3|`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
 
 ### gdalUtils
 
@@ -3528,7 +3528,7 @@ Overview of extensions included in R-bundle-CRAN installations
 | --- | --- |
 |0.5.0|`R-bundle-CRAN/2026.07-foss-2026.1`|
 |0.4.0|`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`|
-|0.3.0|`R-bundle-CRAN/2024.11-foss-2024a`|
+|0.3.0|`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`|
 
 ### gomms
 
@@ -3665,6 +3665,7 @@ Overview of extensions included in R-bundle-CRAN installations
 |3.9.0|`R-bundle-CRAN/2026.07-foss-2026.1`|
 |3.7.0|`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`|
 |3.6.5|`R-bundle-CRAN/2024.11-foss-2024a`|
+|3.6.4|`R-bundle-CRAN/2024.06-foss-2023b`|
 
 ### gsl
 
@@ -3695,7 +3696,7 @@ Overview of extensions included in R-bundle-CRAN installations
 
 |`gsubfn` version|R-bundle-CRAN modules that include it|
 | --- | --- |
-|0.7|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
+|0.7|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
 
 ### gsw
 
@@ -4312,7 +4313,7 @@ Overview of extensions included in R-bundle-CRAN installations
 
 |`kableExtra` version|R-bundle-CRAN modules that include it|
 | --- | --- |
-|1.4.0|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
+|1.4.0|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
 
 ### kde1d
 
@@ -5560,7 +5561,7 @@ Overview of extensions included in R-bundle-CRAN installations
 | --- | --- |
 |1.0.20|`R-bundle-CRAN/2026.07-foss-2026.1`|
 |1.0.13|`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`|
-|1.0.6|`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
+|1.0.6|`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
 
 ### momentfit
 
@@ -5615,7 +5616,7 @@ Overview of extensions included in R-bundle-CRAN installations
 | --- | --- |
 |1.3|`R-bundle-CRAN/2026.07-foss-2026.1`|
 |1.2|`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`|
-|1.1.1|`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
+|1.1.1|`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
 
 ### mpoly
 
@@ -6189,7 +6190,7 @@ Overview of extensions included in R-bundle-CRAN installations
 
 |`pander` version|R-bundle-CRAN modules that include it|
 | --- | --- |
-|0.6.6|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
+|0.6.6|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
 
 ### paradox
 
@@ -6315,7 +6316,7 @@ Overview of extensions included in R-bundle-CRAN installations
 
 |`pbmcapply` version|R-bundle-CRAN modules that include it|
 | --- | --- |
-|1.5.1|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`|
+|1.5.1|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`|
 
 ### PCAmatchR
 
@@ -6845,7 +6846,7 @@ Overview of extensions included in R-bundle-CRAN installations
 
 |`PWEALL` version|R-bundle-CRAN modules that include it|
 | --- | --- |
-|1.3.0.1|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`|
+|1.3.0.1|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`|
 
 ### qgam
 
@@ -7005,7 +7006,7 @@ Overview of extensions included in R-bundle-CRAN installations
 | --- | --- |
 |1.3.1|`R-bundle-CRAN/2026.07-foss-2026.1`|
 |1.2.0|`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`|
-|1.1.1|`R-bundle-CRAN/2024.11-foss-2024a`|
+|1.1.1|`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`|
 
 ### R2WinBUGS
 
@@ -7212,7 +7213,7 @@ Overview of extensions included in R-bundle-CRAN installations
 |`RcppNumerical` version|R-bundle-CRAN modules that include it|
 | --- | --- |
 |0.7-0|`R-bundle-CRAN/2026.07-foss-2026.1`|
-|0.6-0|`R-bundle-CRAN/2023.12-foss-2023a`|
+|0.6-0|`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
 
 ### RcppParallel
 
@@ -8353,7 +8354,7 @@ Overview of extensions included in R-bundle-CRAN installations
 |`sgdGMF` version|R-bundle-CRAN modules that include it|
 | --- | --- |
 |1.0.1|`R-bundle-CRAN/2026.07-foss-2026.1`<br/>`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`|
-|1.0|`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
+|1.0|`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
 
 ### shadowtext
 
@@ -9263,7 +9264,7 @@ Overview of extensions included in R-bundle-CRAN installations
 |`texreg` version|R-bundle-CRAN modules that include it|
 | --- | --- |
 |1.39.5|`R-bundle-CRAN/2026.07-foss-2026.1`|
-|1.39.4|`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
+|1.39.4|`R-bundle-CRAN/2025.11-foss-2025b`<br/>`R-bundle-CRAN/2025.10-foss-2025a`<br/>`R-bundle-CRAN/2024.11-foss-2024a`<br/>`R-bundle-CRAN/2024.06-foss-2023b`<br/>`R-bundle-CRAN/2023.12-foss-2023a`|
 
 ### textcat
 
diff --git a/mkdocs.yml b/mkdocs.yml
index b1b0cf18cc..c3dc362c73 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -232,7 +232,7 @@ extra:
       icon: fontawesome/solid/rss
       link: https://eessi.io/docs/feed_json_created.json
   # this gets auto-updated via update_generated_time.sh script run in update_available_software.yml action
-  generated_time: "Thu, 29 Oct 2026 at 17:52:49 UTC"
+  generated_time: "Fri, 30 Oct 2026 at 17:34:19 UTC"
   slack_invite_url: "https://join.slack.com/t/eessi-hpc/shared_invite/zt-2wg10p26d-m_CnRB89xQq3zk9qxf1k3g"
 extra_javascript:
   # mermaid diagram